8 May
2024
8 May
'24
12:59 p.m.
Hi,
Thanks for your inquiry! I'm not sure from your description what the actual problem
is, you are running the stdp_windows tutorial notebook, and there is an error? Could you
post a full log?
It would be great if you could use the latest NESTML version from GitHub (try running
python3 -m pip install git+https://github.com/nest/nestml/).
Note that the notebook (in cell 3) contains the path
"../../../models/neurons/iaf_psc_delta_neuron.nestml", so you should first
change directory (cd) to "doc/tutorials/stdp_windows" and run Jupyter Notebook
or Python from that directory. There is no need to change any internal code inside the
generate_code_for() function.
For the error importing the "nest" module in Python, please make sure that the
environment is set up correctly before starting the Jupyter Notebook server. Typically you
can do this by sourcing nest_vars.sh (see bottom of this page
<https://nest-simulator.readthedocs.io/en/stable/installation/noenv_install.html#noenv>),
which sets up the correct PYTHONPATH environment variable. How did you install NEST?
With kind regards,
Charl
On Wed, May 8, 2024, at 00:54, Ashraf Ul Islam Shihab wrote:
Hi,
In nestml/doc/tutorials/stdp_windows notebook, in cell 3, I see an example of fetching
model name, neuron name, and synapse name from
nestml/models/neurons/iaf_psc_delta_neuron.nestml, which appears to have only model inside
of it. It tries to extract the names from a format of
1. model <name>:
2. neuron <name>:
3. synapse <name>:
But the iaf_psc_delta_neuron.nestml file from the latest build doesn't have any
structure as neuron <name>: to my best knowledge. Please let me know if there is any
fix for this problem.
I went ahead and tried to edit the generate_code_for function from NESTCodeGeneratorUtils
class. It can be found here <https://pastebin.com/Qz8JwinA>. But it gives an error
as follows:
[6,GLOBAL, ERROR]: An error occurred while
importing the `nest` module in Python. Please check your NEST installation-related
environment variables and paths, or specify ``nest_version`` manually in the code
generator options.
An exception has occurred, use %tb to see the full traceback.
Best,
Ashraf Ul Islam Shihab
Graduate Research Assistant
Department of Electrical and Computer Engineering
Boise State University (BSU)
Boise, Idaho 83725
Email: ashrafshihab(a)u.boisestate.edu
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