13 Jan
2023
13 Jan
'23
2:50 p.m.
Ah, OK, understood! In case you find you need to add a small bit of custom C++ code to an
otherwise "standard" NESTML neuron model, you could also add this into the Jinja
templates, optionally with an extra clause like {% if neuronName ==
"my_custom_neuron_model" %} ... {% endif %}. Optionally you can make a copy of
the default templates and specify the paths to the customized copy via the mechanism
described at
https://nestml.readthedocs.io/en/latest/extending.html#running-nestml-with-…
Please let me know in case you run into any trouble should you decide to give this
approach a chance.
On Fri, Jan 13, 2023, at 14:45, Beck Strohmer wrote:
Hi Charl, Yes, I actually started out in NESTML and
was able to integrate a new neuron model in NEST so it worked really well. Unfortunately,
I need to add gap junction support to my neuron model which is why I was forced to code
"by hand".
On Fri, Jan 13, 2023 at 2:41 PM Charl Linssen <nest-users(a)turingbirds.com> wrote:
Hi,
This is not addressing your actual question, but I just wanted to check whether you know
about NESTML for writing custom neuron models (https://nestml.readthedocs.org/) and
whether there were any reasons you might prefer to write the model "by hand" in
C++ (there certainly might be! Just curious.)
With kind regards,
Charl
On Fri, Jan 13, 2023, at 14:38, bstrohmer(a)gmail.com wrote:
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
I would like to install a custom neuron model in
NEST so I followed the
instructions for the nest-extension-module. It is able to build the .so
files but it errors during the final install of the project as seen in
the below message.
Install the project...
-- Install configuration: ""
-- Installing:
/home/bs/git_repos/extension/nest-simulator/result/include/piftestmodule/pif_psc_alpha.h
-- Installing:
/home/bs/git_repos/extension/nest-simulator/result/lib/nest/piftestmodule.so
-- Installing:
/home/bs/git_repos/extension/nest-simulator/result/lib/nest/libpiftestmodule.so
Traceback (most recent call last):
File "<string>", line 1, in <module>
File
"/home/bs/git_repos/extension/nest-simulator/result/lib/python3.8/site-packages/nest/__init__.py",
line 444
err = AttributeError(f"Cannot set attribute '{attr}' on module
'nest'")
I am trying to install one of the example neurons provided first
(pif_psc_alpha) so I do not expect that it is an issue within the
source files. Thanks for any advice in correcting this issue!
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org