Hi Charl, Yes, I would greatly appreciate a deeper dive into this with you. Can you write to me directly at bstrohmer@gmail.com so we can find a suitable time? Thanks so much!
Best, Beck
On Wed, Mar 15, 2023 at 3:07 PM Charl Linssen nest-users@turingbirds.com wrote:
Hi, thanks very much for your inquiry!
To add a gap junction to a NESTML model, a few modifications to the toolchain would be required. A first idea would be to add a new input port with a type of "gap". If a gap junction port is present, we could then generate the handler for a GapJunctionEvent, as well as to generate the necessary code for the waveform relaxation mechanism in the update() method of the neuron.
If you'd like to do a deeper dive into this together, I would be happy to have a video call this week or the next (after that I will be in Marseille for the HBP Summit). Please let me know what options would work best for you.
Yours, Charl
On Tue, Mar 14, 2023, at 11:10, bstrohmer@gmail.com wrote:
Hi everyone, has anyone successfully added a gap junction to an existing model using NESTML? I would like to add gap junction support to the aeif_cond_alpha neuron model but it is unclear how this can be done within NESTML. As suggested by Charl, I started to look into updating the jinja templates but I am not sure this will be possible since both the input/output of the neuron and the model's equation must be updated to support gap junctions. If anyone has any suggestions or if anyone has NESTML code for adding a gap junction to an existing model, I would be very appreciative. Thanks! _______________________________________________ NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org
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