Dear Petia,
I understand your worries with updates, but it's really quite hard to help you with a 6 year old OS.
Can you maybe check if NEST 3.3 is working on a newer system, if you can't upgrade the machine? All NEST development happens on current systems and there's so many things that could be wrong or interacting in incompatible or bad ways and it is very likely that your problem goes away when you update.
Cheers,
Jochen!
Hi Petia,
this sound's a lot like an
inconsistency in the Python setup.
Did you choose the venv or the
prefix path of https://nest-simulator.readthedocs.io/en/v3.3/installation/linux_install.html#linux-install?
Are you running the `make
installcheck` from the same
location where the pytest-* are
installed, i.e. consistently *in*
the environment or *outside*?
Best,
Dennis
Hi Dennis,
We've installed junitparser but again we do not have success:
Executing NEST's testsuite...
Error: PyNEST testing requested, but 'pytest' cannot be run.
Testing also requires the 'pytest-xdist' and 'pytest-timeout' extensions.
CMakeFiles/installcheck.dir/build.make:70: recipe for target 'CMakeFiles/installcheck' failed
make[3]: *** [CMakeFiles/installcheck] Error 1
CMakeFiles/Makefile2:464: recipe for target 'CMakeFiles/installcheck.dir/all' failed
make[2]: *** [CMakeFiles/installcheck.dir/all] Error 2
CMakeFiles/Makefile2:471: recipe for target 'CMakeFiles/installcheck.dir/rule' failed
make[1]: *** [CMakeFiles/installcheck.dir/rule] Error 2
Makefile:179: recipe for target 'installcheck' failed
make: *** [installcheck] Error 2
Even though we have installed pytest-xdist and tytest-timeout extensions.Could you help us?
Best,Petia
On Wednesday, June 29, 2022 at 01:52:11 PM GMT+3, Dennis Terhorst <d.terhorst@fz-juelich.de> wrote:
Hi,
could you check if you have junitparser in your python environment? I saw a similar inexpressive error message when that package is missing. We need to fix the detection of junitparser in `testsuite/do_tests.sh`, the error message may not be printed.
Best,
Dennis
On 29.06.22 12:33, Petia Koprinkova wrote:
Hi,Could you help us with NEST 3.3. installation? The final (check) state give the following error:
Executing NEST's testsuite...
CMakeFiles/installcheck.dir/build.make:70: recipe for target 'CMakeFiles/installcheck' failed
make[3]: *** [CMakeFiles/installcheck] Error 1
CMakeFiles/Makefile2:446: recipe for target 'CMakeFiles/installcheck.dir/all' failed
make[2]: *** [CMakeFiles/installcheck.dir/all] Error 2
CMakeFiles/Makefile2:453: recipe for target 'CMakeFiles/installcheck.dir/rule' failed
make[1]: *** [CMakeFiles/installcheck.dir/rule] Error 2
Makefile:179: recipe for target 'installcheck' failed
make: *** [installcheck] Error 2
We have Ubuntu desctop with installed NEST 2.18 and it works. But for some reason NEST 3.3. failed.
Best regards,Petia Koprinkova-Hristova
_______________________________________________ NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org-- Dipl.-Phys. Dennis Terhorst Coordinator Software Development Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Theoretical Neuroscience, Institute for Advanced Simulation (IAS-6) Jülich Research Centre, Member of the Helmholz Association and JARA 52425 Jülich, Germany Building 15.22 Room 4004 Phone +49 2461 61-85062 Fax +49 2461 61- 9460 d.terhorst@fz-juelich.de ---------------------------------------------------------------------- Forschungszentrum Juelich GmbH, 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Frauke Melchior ----------------------------------------------------------------------_______________________________________________
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To unsubscribe send an email to users-leave@nest-simulator.org
_______________________________________________ NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org
-- Dipl.-Phys. Dennis Terhorst Coordinator Software Development Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Theoretical Neuroscience, Institute for Advanced Simulation (IAS-6) Jülich Research Centre, Member of the Helmholz Association and JARA 52425 Jülich, Germany Building 15.22 Room 4004 Phone +49 2461 61-85062 Fax +49 2461 61- 9460 d.terhorst@fz-juelich.de ---------------------------------------------------------------------- Forschungszentrum Juelich GmbH, 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Frauke Melchior ----------------------------------------------------------------------
-- ------------------------------------------------------------------------------------- Steffen Graber Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience & JARA Institute Brain Structure-Function Relationships (INM-10) Forschungszentrum Jülich GmbH http://www.csn.fz-juelich.de SDL Neuroscience Division HPC in Neuroscience Jülich Supercomputing Centre Institute for Advanced Simulation Forschungszentrum Jülich GmbH E-mail: s.graber@fz-juelich.de Phone: +49 2461 61 85457 http://www.fz-juelich.de/ias/jsc --------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------- Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr. Astrid Lambrecht, Prof. Dr. Frauke Melchior --------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------
_______________________________________________ NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org
-- ------------------------------------------------------------------------------------- Steffen Graber Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience & JARA Institute Brain Structure-Function Relationships (INM-10) Forschungszentrum Jülich GmbH http://www.csn.fz-juelich.de SDL Neuroscience Division HPC in Neuroscience Jülich Supercomputing Centre Institute for Advanced Simulation Forschungszentrum Jülich GmbH E-mail: s.graber@fz-juelich.de Phone: +49 2461 61 85457 http://www.fz-juelich.de/ias/jsc --------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------- Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr. Astrid Lambrecht, Prof. Dr. Frauke Melchior --------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------
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-- Dr. Jochen Martin Eppler Phone: +49(2461)61-96653 ---------------------------------- Simulation Laboratory Neuroscience Jülich Supercomputing Centre Institute for Advanced Simulation