Dear all,
in the past weeks there was some on- and off-list discussion around the Tsodyks models and examples in NEST and I want to put some files out here that might be interesting for more people.
Around 2019 we were trying to port some old scripts to more recent versions of NEST and did some basic plots. There are descriptions and PyNEST examples available in the docs Model Directory [1, 2, 3], and the example Notebook in the docs runs with NEST 3.x.
Additionally the short-term burst behavior can be reproduced with the attached scripts (taken from the pre-3.x repository and updated to 3.x syntax, still a bit untidy), but to my knowledge this was not yet transferred into a PyNEST version.
There has also been some discussion on the mailing list some time ago [4], but I couldn't find any results that have surfaced on the list here, though I know of some work going on in this direction in different groups.
It would be interesting to hear about your perspective and see where we can combine experience!
best, Dennis
[1]: https://nest-simulator.readthedocs.io/en/v3.3/models/index.html#short-term-p...
[2]: https://nest-simulator.readthedocs.io/en/v3.3/models/tsodyks_synapse.html
[3]: https://nest-simulator.readthedocs.io/en/v3.3/models/tsodyks2_synapse.html
[4]: https://nest-simulator.org/mailinglist/hyperkitty/list/users@nest-simulator....
Dear all!
Thanks for your efforts. Partially based on the implementation by Moritz, I've put together the network in Brian2 (https://github.com/brian-team/brian2/pull/1404).
It would be nice if we could also have a PyNEST version. I'm happy to help. Any volunteers?
Best,
Sebastian
On 26.04.22 10:53, Dennis Terhorst wrote:
Dear all,
in the past weeks there was some on- and off-list discussion around the Tsodyks models and examples in NEST and I want to put some files out here that might be interesting for more people.
Around 2019 we were trying to port some old scripts to more recent versions of NEST and did some basic plots. There are descriptions and PyNEST examples available in the docs Model Directory [1, 2, 3], and the example Notebook in the docs runs with NEST 3.x.
Additionally the short-term burst behavior can be reproduced with the attached scripts (taken from the pre-3.x repository and updated to 3.x syntax, still a bit untidy), but to my knowledge this was not yet transferred into a PyNEST version.
There has also been some discussion on the mailing list some time ago [4], but I couldn't find any results that have surfaced on the list here, though I know of some work going on in this direction in different groups.
It would be interesting to hear about your perspective and see where we can combine experience!
best, Dennis
NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org
Hi,
given the repeated rediscoveries of the model we have seen over the past 20 years on this list and off this list, I think it would be appropriate to write a ReScience article on it. Maybe such an article could show a Brian2 and a PyNEST version side by side.
Regards, Markus
On 4/26/22 14:19, Sebastian Schmitt wrote:
Dear all!
Thanks for your efforts. Partially based on the implementation by Moritz, I've put together the network in Brian2 (https://github.com/brian-team/brian2/pull/1404).
It would be nice if we could also have a PyNEST version. I'm happy to help. Any volunteers?
Best,
Sebastian
On 26.04.22 10:53, Dennis Terhorst wrote:
Dear all,
in the past weeks there was some on- and off-list discussion around the Tsodyks models and examples in NEST and I want to put some files out here that might be interesting for more people.
Around 2019 we were trying to port some old scripts to more recent versions of NEST and did some basic plots. There are descriptions and PyNEST examples available in the docs Model Directory [1, 2, 3], and the example Notebook in the docs runs with NEST 3.x.
Additionally the short-term burst behavior can be reproduced with the attached scripts (taken from the pre-3.x repository and updated to 3.x syntax, still a bit untidy), but to my knowledge this was not yet transferred into a PyNEST version.
There has also been some discussion on the mailing list some time ago [4], but I couldn't find any results that have surfaced on the list here, though I know of some work going on in this direction in different groups.
It would be interesting to hear about your perspective and see where we can combine experience!
best, Dennis
NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org
NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org
Hi,
It would be great to have a NESTML version of the 'Tsodyks' synapse model. I'd be happy to help out whatever way possible in the implementation.
Kind regards, Charl
On Tue, Apr 26, 2022, at 14:28, Markus Diesmann wrote:
Hi,
given the repeated rediscoveries of the model we have seen over the past 20 years on this list and off this list, I think it would be appropriate to write a ReScience article on it. Maybe such an article could show a Brian2 and a PyNEST version side by side.
Regards, Markus
On 4/26/22 14:19, Sebastian Schmitt wrote:
Dear all!
Thanks for your efforts. Partially based on the implementation by Moritz, I've put together the network in Brian2 (https://github.com/brian-team/brian2/pull/1404).
It would be nice if we could also have a PyNEST version. I'm happy to help. Any volunteers?
Best,
Sebastian
On 26.04.22 10:53, Dennis Terhorst wrote:
Dear all,
in the past weeks there was some on- and off-list discussion around the Tsodyks models and examples in NEST and I want to put some files out here that might be interesting for more people.
Around 2019 we were trying to port some old scripts to more recent versions of NEST and did some basic plots. There are descriptions and PyNEST examples available in the docs Model Directory [1, 2, 3], and the example Notebook in the docs runs with NEST 3.x.
Additionally the short-term burst behavior can be reproduced with the attached scripts (taken from the pre-3.x repository and updated to 3.x syntax, still a bit untidy), but to my knowledge this was not yet transferred into a PyNEST version.
There has also been some discussion on the mailing list some time ago [4], but I couldn't find any results that have surfaced on the list here, though I know of some work going on in this direction in different groups.
It would be interesting to hear about your perspective and see where we can combine experience!
best, Dennis
NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org
NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org
--
Prof. Dr. Markus Diesmann, Director Inst of Neuroscience and Medicine (INM-6) Tel +49-2461-61-4748 (secr) Computational and Systems Neuroscience & +49-2461-61-9301 (lab) Institute for Advanced Simulation (IAS-6) Fax +49-2461-61-9460 Theoretical Neuroscience Mob +49-175-290-1943 Jülich Research Centre and JARA Institute I Jülich, Germany
Department of Psychiatry, Psychotherapy and Psychosomatics School of Medicine, RWTH Aachen University Aachen, Germany
www.nest-initiative.org www.csn.fz-juelich.de
NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org
Attachments:
- smime.p7s
-
Charl Linssen -
Dennis Terhorst -
Markus Diesmann -
Sebastian Schmitt