Dear Samuel,
NEST does not actually specify a specific library version to link
against, but rather determines the one available on your system during
the run of cmake.
If you upgrade your environment, you might have to cmake and compile
NEST anew in order for it to pick up the new version. To reduce the risk
of having old and new things interfere, it is usually safest to remove
the old installation before doing this.
Best regards,
Jochen!
On 06.09.19 16:49, samuel.bottani(a)parisdescartes.fr wrote:
Hi,
nestsimulator-2.18.0 fails PyNEST installation as requesting libgsl.so.23 while
libgsl.so.25 is available (see brelow --1-- log of installcheck for PyNEST tests)
cmake reports no errors with GSL (see bleow --2-- log extract of cmake output )
configuration: linux manjaro latest system update 2019-09-05
Sorry for my ignorance : is there a way to force linking with most recent gsl library ?
Or is it necessary to install also the old library version somehow? If then how ?
Thank you in advance for any help
Samuel Bottani
--1--
Phase 7: Running PyNEST tests.
------------------------------
Using nosetests.
Failure: ImportError (libgsl.so.23: cannot open shared object file: No such file or
directory) ... ERROR
Failure: ImportError (libgsl.so.23: cannot open shared object file: No such file or
directory) ... ERROR
ERROR: Failure: ImportError (libgsl.so.23: cannot open shared object file: No such
file or directory)
File "/usr/lib/python3.7/site-packages/nose/failure.py", line 39, in
runTest
ImportError: libgsl.so.23: cannot open shared object file: No such file or directory
ERROR: Failure: ImportError (libgsl.so.23: cannot open shared object file: No such
file or directory)
File "/usr/lib/python3.7/site-packages/nose/failure.py", line 39, in
runTest
ImportError: libgsl.so.23: cannot open shared object file: No such file or directory
FAILED (errors=2)
PyNEST tests: 2
Passed: 0
Skipped: 0
Failed: 2
--2-- Concerning GLS log :
Use GSL : Yes (GSL 2.6)
Includes : /usr/include
Libraries : /usr/lib/libgsl.so;/usr/lib/libgslcblas.so
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--
Dr. Jochen Martin Eppler
Phone: +49(2461)61-96653
----------------------------------
Simulation Laboratory Neuroscience
Jülich Supercomputing Centre
Institute for Advanced Simulation
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Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Volker Rieke
Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt,
Prof. Dr. Sebastian M. Schmidt
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